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Genes to Cells (2010) 15, 101-110. doi:10.1111/j.1365-2443.2009.01369.x
© 2010 Blackwell Publishing or its licensors

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Solution structure of a zinc-finger domain that binds to poly-ADP-ribose

Shin Isogai1, Shin-Ichiro Kanno2, Mariko Ariyoshi1, Hidehito Tochio1,3,*, Yutaka Ito4, Akira Yasui and Masahiro Shirakawa1,3,4,5,*

1 Department of Molecular Engineering, Graduate School of Engineering, Kyoto University, Kyoto-Daigaku Katsura, Kyoto 615-8510, Japan
2 Department of Molecular Genetics, Institute of Development, Aging and Cancer, Tohoku University, Seiryomachi 4-1, Sendai 980-8575, Japan
3 CREST, JST, 4-1-8 Honcho, Kawaguchi, Saitama 332-0012, Japan
4 Department of Chemistry, Tokyo Metropolitan University, 1-1 Minami-Osawa, Hachioji, Tokyo 192-0397, Japan
5 RIKEN, Yokohama Institute, 1-7-22, Suehirocho, Tsurumi, Yokohama 230-0045, Japan

Poly-ADP-ribosylation is a unique post-translational modification that controls various nuclear events such as repair of DNA single-strand breaks. Recently, the protein containing the poly-ADP-ribose (pADPr)-binding zinc-finger (PBZ) domain was shown to be a novel AP endonuclease and involved in a cell cycle checkpoint. Here, we determined the three-dimensional structure of the PBZ domain from Drosophila melanogaster CG1218-PA using NMR spectroscopy. The domain folds into a C2H2-type zinc-finger structure in an S configuration, containing a characteristic loop between the zinc-coordinating cysteine and histidine residues. This is distinct from the structure of other C2H2-type zinc fingers. NMR signal changes that occur when pADPr binds to the PBZ domains from CG1218-PA and human checkpoint with FHA (forkhead-associated) and ring finger (CHFR) and mutagenesis suggest that a surface relatively well conserved among PBZ domains may serve as a major interface with pADPr.


Communicated by: Osamu Nureki

* shirakawa{at}moleng.kyoto-u.ac.jp or tochio{at}moleng.kyoto-u.ac.jp







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