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Genes to Cells (2004) 9, 1139-1150. doi:10.1111/j.1365-2443.2004.00797.x
© 2004 Blackwell Publishing or its licensors

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DNA binding properties of human DNA polymerase {eta}: implications for fidelity and polymerase switching of translesion synthesis

Rika Kusumoto1,2,a, Chikahide Masutani1, Shizu Shimmyo1,2, Shigenori Iwai3 and Fumio Hanaoka1,4,*

1 Graduate School of Frontier Biosciences, Osaka University, and CREST, Japan Science and Technology Corporation, 1–3 Yamada-oka, Suita, Osaka 565–0871, Japan
2 Graduate School of Pharmaceutical Sciences, Osaka University, 1–6 Yamada-oka, Suita, Osaka 565–0871, Japan
3 Graduate School of Engineering Science, Osaka University, 1–3 Machikaneyama, Toyonaka, Osaka 560–8531, Japan
4 Cellular Physiology Laboratory, RIKEN Discovery Research Institute, Wako-shi, Saitama 351–0198, Japan

The human XPV (xeroderma pigmentosum variant) gene is responsible for the cancer–prone xeroderma pigmentosum syndrome and encodes DNA polymerase {eta} (pol {eta}), which catalyses efficient translesion synthesis past cis-syn cyclobutane thymine dimers (TT dimers) and other lesions. The fidelity of DNA synthesis by pol {eta} on undamaged templates is extremely low, suggesting that pol {eta} activity must be restricted to damaged sites on DNA. Little is known, however, about how the activity of pol {eta} is targeted and restricted to damaged DNA. Here we show that pol {eta} binds template/primer DNAs regardless of the presence of TT dimers. Rather, enhanced binding to template/primer DNAs containing TT dimers is only observed when the 3'-end of the primer is an adenosine residue situated opposite the lesion. When two nucleotides have been incorporated into the primer beyond the TT dimer position, the pol {eta}-template/primer DNA complex is destabilized, allowing DNA synthesis by DNA polymerases {alpha} or {delta} to resume. Our study provides mechanistic explanations for polymerase switching at TT dimer sites.


Communicated by: Hiroyuki Araki

aPresent address: National Institute on Ageing, 5600 Nathan Shock Drive, Baltimore, MD 21224, USA

* Correspondence: E-mail: fhanaoka{at}fbs.osaka-u.ac.jp




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