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1 Department of Life Sciences, Graduate School of Arts and Sciences, The University of Tokyo, Komaba 3-8-1, Meguro-ku, Tokyo 153-8902, Japan
2 PRESTO, Japan Science and Technology Agency, 4-1-8 Honcho Kawaguchi, Saitama 332-0012, Japan
3 Laboratory for Proteolytic Neuroscience, RIKEN Brain Science Institute, Saitama 351-0198, Japan
| Abstract |
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| Introduction |
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To this end, we focused on the membrane trafficking of the cation-independent mannose 6-phosphate receptor (CI-M6PR) and the causal connections between its mislocalization and Alzheimer's disease (AD). CI-M6PR is involved in the trafficking of a broad range of lysosomal enzymes from the trans-Golgi network (TGN) or the cell surface to lysosomes; it mainly shuttles between endosomes and the TGN (Ghosh et al. 2003; Arighi et al. 2004; Scott et al. 2006). It has been shown that defects in the shuttling of CI-M6PR between endosomes and the TGN result in the perturbation of its localization in the cell and can cause many pathogenic states; for example, Niemann-Pick disease, I-cell disease, and, in particular, AD (Cataldo et al. 1997; Mathews et al. 2002; Tomiyama et al. 2004; Kar et al. 2006; Waguri et al. 2006). One of the principal pathological hallmarks of AD is the deposition of amyloid β (Aβ), in the form of senile plaques, throughout the hippocampus and neocortex. Aβ is derived from the amyloid precursor protein (APP), and is formed by the sequential cleavage of APP by the β- and
-secretase enzymes (Saido & Iwata 2006). The localization of β-site APP-cleaving enzyme 1 (BACE1), which is a transmembrane protease with β-secretase activity, is regulated by an acidic-cluster di-leucine motif, which is recognized by Golgi-localized,
-ear-containing, ADP-ribosylation factor binding protein (Shiba et al. 2004; He et al. 2005; Tesco et al. 2007). Golgi-localized,
-ear-containing, ADP-ribosylation factor binding protein also plays a crucial role in the trafficking of CI-M6PR. In addition, knockdown by RNA interference (RNAi) of the vacuolar protein sorting protein VPS26, which is another regulator of CI-M6PR transport, has been reported to induce an increased secretion of Aβ40 (Small et al. 2005). Therefore, we predicted that kinases that perturb the vesicular transport of CI-M6PR between the endosomes and the TGN would modulate the extent of Aβ secretion.
In this article, we have used cell array chips and gene silencing by RNAi, in combination with visual assays, to establish a two-step functional screening system for human kinases, or their regulators, that might be involved in the localization or shuttling of CI-M6PR. Using this method, we identified five candidate kinases. Furthermore, we found that knockdown of PRKACG (protein kinase, cAMP-dependent, catalytic, gamma) or glycogen synthase kinase 3β (GSK3β), which were two of the five candidates, induced the extensive production of secreted Aβ, and concurrently perturbed the intracellular distribution of BACE1. These results indicated that decreased activity of these two kinases is a possible risk factor for AD. In addition, we found that a functional defect in cytoplasmic linker protein-associating protein 2 (CLASP2), which arose due to the modulation of GSK3β activity, perturbed membrane trafficking between the endosomes and the TGN, and resulted in the mislocalization of BACE1 and extensive Aβ secretion.
| Results |
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The scheme for our screening and analysis is shown in Fig. 1. To identify human kinases that might be involved in the localization or shuttling of CI-M6PR, we used fluorescence imaging to monitor changes in the localization of CI-M6PR. Immunofluorescence analysis showed an extensive co-localization of CI-M6PR with p230, which is a marker of the TGN, under normal conditions in HeLa cells (Fig. 1A, control). However, if shuttling is perturbed using an appropriate kinase inhibitor or an siRNA against a particular kinase, CI-M6PR that is being recycled will be trapped in the early/late endosomes or at the plasma membrane (PM). As a result, the fluorescence signal from CI-M6PR becomes dispersed throughout the cytoplasmic endosomes and no longer overlaps with that of p230. The morphology of the Golgi, however, is virtually unaffected, as shown by the staining pattern of p230. For example, treatment of HeLa cells with 3-methyladenine (3-MA), which is a specific inhibitor of the class III phosphoinositide 3-kinase (PI3K) and is known to inhibit retrograde transport from early endosomes to the TGN, resulted in a dispersed signal for CI-M6PR that did not co-localize with that of p230 (Fig. 1A, Perturbation of transport by 3-MA) (Hirosako et al. 2004).
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To allow the imaging of as many samples as possible for large-scale screening applications and to acquire numerous imaging data in a systematic manner, we developed an automated high-throughput fluorescence-based cell imaging system using cell array chips. The system consisted of microchamber array chips, an automatic pipetting device (Fig. 1B, the CellTech Station, which was custom-made for us by Nikkyo Technos Co., Ltd), and an automatic system for the capture of fluorescent images. We used two types of imaging tool: an INCell Analyzer 1000 system (GE Healthcare Co., Ltd) and an LSM510 laser scanning confocal microscope (Carl Zeiss, Co., Ltd).
After identification of candidate kinases that perturbs CI-M6PR localization, we are going to investigate the relation between the defect in the trafficking of CI-M6PR and the AD pathogenesis using biochemical and cell biological studies (Fig. 1B, a panels on the bottom-right corner). Concurrently, we are going to search for the proteins that are upstream or downstream of the candidate kinases using available database or literature information network, and examine the role of the protein in the AD pathogenesis (Fig. 1B, a panel on the bottom-left corner). Considering all the protein information obtained above together, we are going to identify the key protein(s) involved in the AD pathogenesis.
Identification of kinase inhibitors that perturb CI-M6PR localization and TGN morphology
To determine the types of kinase that affect the intracellular localization of CI-M6PR or TGN morphology, we examined the effect of 29 different kinase inhibitors (Table S1 in Supporting Information) on the localization of CI-M6PR using our cell array chip-based automatic screening system. HeLa cells were first incubated with various kinase inhibitors in microchambers, and then fixed and immunostained with antibodies against p230 and CI-M6PR. Images were acquired using the INCell Analyzer 1000 or LSM510 confocal microscope, and the co-localization of CI-M6PR fluorescence (red) and p230 fluorescence (green) was analyzed by means of the co-localization index that is described in Fig. 2.
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2 µM). Propranolol, which is another PKA inhibitor, resulted in the localization of CI-M6PR in punctate cytoplasmic structures rather than in the TGN (Fig. 3, Propranolol) (Saucerman et al. 2006). Staurosporine is a broad spectrum inhibitor of protein kinases. The cells appeared to become more rounded after treatment with staurosporine, but the localization of CI-M6PR changed in a similar manner to that seen with the other inhibitors. TBB is a specific casein kinase II (CK2) inhibitor. The retrieval of CI-M6PR from the endosomes to the TGN was reported to be controlled by the phosphorylation of phosphofurin acidic cluster sorting protein 1 (PACS-1) by CK2 (Scott et al. 2006). GSK3β kinase inhibitor VII is a specific inhibitor of GSK3β kinase, and caused fragmentation of the TGN and the apparent partial segregation of the two markers (Fig. 3; GSK3β kinase inhibitor VII). The same phenotype was observed after treatment with LiCl, another GSK3β inhibitor (Fig. 3; LiCl) (Cheng et al. 2008). As a result, we chose three types of kinase for the subsequent RNAi experiments: protein kinases of the AGC group, CK2, and GSK3β.
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Next, we examined the effect of siRNAs (Silencer Human Kinase siRNA Library; Ambion) for 80 kinase genes (AGC group, 76 genes; CK2, 3 genes; GSK3β, 1 gene; the names of the kinases are given in Table S2 in Supporting Information) on CI-M6PR localization/sorting using our automatic visual screening system with the LSM510 confocal microscope as the imaging system. With our RNAi system, the efficiency of gene silencing in HeLa cells was found to be more than 90%, as measured morphologically by the knockdown of kinesin family member 11 (KIF11) (Fig. S1 in Supporting Information). We identified five kinases whose knockdown perturbed the localization of CI-M6PR: CDC42 binding protein kinase-β (CDC42BPB), protein kinase, cAMP-dependent, catalytic-
(PRKACA), protein kinase, cAMP-dependent, catalytic-
(PRKACG), GSK3β, and CSNK2A1 (casein kinase 2, alpha 1 polypeptide).
CDC42BPB regulates cell polarity by controlling the dynamics of actin and myosin (Gomes et al. 2005; Wilkinson et al. 2005). PRKACA and PRKACG are catalytic subunits of PKA, which regulates the dynamics of many organelles through its interaction with A-kinase anchoring protein (Wong & Scott 2004). GSK3β regulates microtubule dynamics and cellular responses, including protein synthesis, gene expression, and protein degradation (Akhmanova et al. 2001; Fumoto et al. 2006). CSNK2A1 is one of the subunits of CK2, which was reported to regulate CI-M6PR trafficking in HeLa cells (Scott et al. 2006). We confirmed that the protein levels of these five kinases were reduced in the cells that had been transfected with the appropriate siRNAs compared to those in cells that had been transfected with an siRNA against enhanced green fluorescent protein (eGFP) (Fig. S2A in Supporting Information).
Gene silencing of CDC42BPB induced the redistribution of CI-M6PR from the TGN to cytoplasmic structures (Fig. 4, CDC42BPB), but also resulted in the partial disruption of the Golgi apparatus. Gene silencing of PRKACA, PRKACG or CSNK2A1 changed the localization of CI-M6PR from the TGN to cytoplasmic structures (Fig. 4, PRKACA, PRKACG, CSNK2A1). GSK3β knockdown caused the fragmentation of the TGN that contained both CI-M6PR and p230 (Fig. 4, GSK3B).
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Effects of gene silencing of the identified kinases on APP processing
We next investigated the relation between the perturbations in the trafficking of CI-M6PR that were induced by kinase knockdown and the pathogenic processing of Aβ using HEK-APP cells, which stably express Swedish mutant APP (APPsw). We confirmed that the protein level of each kinase was decreased in the kinase-knockdown cells (Fig. S2B in Supporting Information).
Initially, to detect the final products of APP processing, we measured the amount of Aβ40 and Aβ42 that had been secreted into the medium using a sandwich ELISA. Gene silencing of PRKACG and GSK3β increased the amounts of secreted Aβ40 and Aβ42 by approximately twofold in both cases, compared with that secreted by the control cells (Fig. 5A). Gene silencing of the other kinases had no effect on the amount of Aβ40 or Aβ42 that was secreted.
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Finally, we examined β-secretase activity in the cells. The activity was estimated by measuring the amount of the APP C-terminal C99 fragment, which is produced by β-secretase, in the cells. The C99 fragment was detected by Western blotting with the 82E1 monoclonal antibody, which reacts with the C99 fragment but does not react with the APP C-terminal fragment that is produced by
-secretase. We found that gene silencing of PRKACG or GSK3β increased the level of the C99 fragment compared with that in control cells. Taken together with the results of the APP processing experiments, we concluded that the knockdown of PRKACG or GSK3β induced a substantial increase in Aβ secretion. It remains possible that the other kinases (CDC42BPB, PRKACA and CSNK2A1) that have been implicated in CI-M6PR trafficking could be involved in the pathogenesis of CI-M6PR-related diseases other than AD.
Next we examined the subcellular localization of the AD-related protein, BACE1, in PRKACG- and GSK3β-knockdown cells because there had been many reports that suggested a positive correlation between the perturbation of membrane trafficking of BACE1 and the pathogenesis of AD, and because CI-M6PR and BACE1 contain the same sorting signal in their cytoplasmic region (Shiba et al. 2004; He et al. 2005; Tesco et al. 2007). To monitor the localization of BACE1, we expressed myc-tagged BACE1 protein in HeLa cells, and carried out indirect immunofluorescence analysis using an anti-myc antibody. In control cells, BACE1 localized mainly to the juxtanuclear region and partially to the PM. We found by dual-immunofluorescence analysis that BACE1 co-localized with EEA1 in the juxtanuclear region, but not in the cytoplasmic vesicles (Fig. 6, control). In contrast, in PRKACG-knockdown cells, the majority of the BACE1 was localized not in the juxtanuclear region but in cytoplasmic vesicles, where it partially co-localized with EEA1 (Fig. 6, PRKACG). In the GSK3β-knockdown cells, almost all the fluorescent signal from BACE1 co-localized with that from EEA1, and the BACE1/EEA1-positive vesicles appeared to be clustered in the central region of the cells, near the centrosome (Fig. 6, GSK3B), as was the signal from CI-M6PR.
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To investigate the relation between GSK3β or PRKACG knockdown and increased Aβ secretion, we searched for proteins whose function is regulated by the kinases and that are involved in the vesicular transport between endosomes and the TGN.
As a result, we focused on the function of CLASP2, which is a microtubule binding protein (Efimov et al. 2007). CLASP2 contains several potential GSK3β phosphorylation motifs and its function could be regulated by GSK3β. CLASP2 associates specifically with the TGN protein GCC185 and functions in the formation of the asymmetric microtubule network in polarized cells. GCC185 was found to play a crucial role both in the retrograde transport of Shiga toxin and CI-M6PR between the recycling endosomes and the TGN, and in the maintenance of Golgi morphology (Akhmanova et al. 2001; Mimori-Kiyosue et al. 2005; Wittmann & Waterman-Storer 2005; Reddy et al. 2006; Derby et al. 2007). In contrast to GSK3β, we could not find any relation between PRKACG and the AD even if we searched for a relationship using the available databases.
First we examined the relation between GSK3β activity and CLASP2 function. We found that GSK3β knockdown reduced the number of centrosomally focused microtubules (oriented microtubule networks around the centrosome) and simultaneously induced a slight fragmentation of the Golgi apparatus (Fig. 7A) as reported previously (Fumoto et al. 2006). We also found that CLASP2-knockdown cells showed the same morphological phenotypes with regard to the centrosomal microtubules but the morphology of the Golgi remained intact (Fig. 7A). CLASP2, which accumulated at the TGN in control cells, dissociated substantially from the fragmented Golgi membranes in GSK3β-knockdown cells (Fig. 7B). In addition, we detected a substantial inhibitory effect on CLASP2 phosphorylation in GSK3β-knockdown or lithium chloride-treated cells (Fig. 7D). These results suggest that a decrease in GSK3β activity could modulate the localization of CLASP2 to the TGN and its function.
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| Discussion |
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PKA has been implicated in the pathological hyperphosphorylation of tau on Ser214 and 409, which leads to the formation of neurofibrillary tangles in AD (Wang et al. 2007). In addition, Su et al. (2003) showed that H-89 (a PKA inhibitor) inhibited the maturation of APP, which involves O-glycosylation during a post-Golgi stage of the secretory pathway, and secretion of Aβ. However, the role of PKA during APP processing is not clear. In this study, we demonstrated the silencing of PRKACG, which is a catalytic subunit of PKA, increased the mature form of APP (Fig. 5B) and activated Aβ secretion (Fig. 5C).
GSK3β has been shown to play a crucial role in the phosphorylation of tau and the modulation of APP processing (Phiel et al. 2003; Noble et al. 2005; Rockenstein et al. 2007; Wang et al. 2007), which suggests that abnormal levels and activity of GSK3β may be associated with the pathology of AD. However, there have been very few reports that have examined the relation between GSK3β activity and a specific trafficking pathway for AD-related proteins. This is the first time that a positive relation between a GSK3β-regulated membrane trafficking pathway and Aβ secretion has been demonstrated.
We searched for proteins whose function is regulated by PRKACG or GSK3β and that are involved in the vesicular transport between endosomes and the TGN. We could not find any association between PRKACG and AD even if we searched for a relationship using the available databases. However, we found that a functional defect in CLASP2, which arose due to the modulation of GSK3β activity, might perturb membrane trafficking between the endosomes and the TGN through its deficient interaction with the Golgi associating protein GCC185. Therefore, we attempted to gain further mechanistic insight at a molecular level into how GSK3β and CLASP2 control the specific trafficking pathway that is involved in the pathogenic secretion of Aβ. As a result, we found that the modulation of GSK3β-mediated phosphorylation of CLASP2 resulted in the mislocalization of BACE1 and extensive Aβ secretion (Fig. 8). There has been reported that the modulation of GSK3β-mediated phosphorylation of CLASP2 results in a significant increase in CLASP2 signal at distal microtubule ends (plus ends) and is involved in the local regulation of microtubule dynamics (Akhmanova et al. 2001; Wittmann & Waterman-Storer 2005). In addition, we observed that GSK3β-knockdown reduced the number of centrosomally-focused microtubules and induced the sight fragmentation of the Golgi apparatus (Fig. 7A). These results indicate that the modulation of GSK3β-mediated phosphorylation of CLASP2 might cause the defect in the microtubule-dependent membrane trafficking pathways between the Golgi and endosomes. In fact, we observed substantial retardation of the retrograde transport of CTxB from endosomes to the TGN (Fig. S4B in Supporting Information). The defect in the transport pathways might cause an extensive coalescence of APP and BACE1 in the juxtanuclear region of GSK3β- or CLASP2-knockdown cells and result in an extensive Aβ secretion. At this time, we cannot elucidate the causal correlation between the defect in the trafficking pathways and the promotion of coalescence of APP and BACE1. More biochemical studies are needed to solve the issue.
There have been several reports that demonstrated that the inhibition of clathrin-mediated endocytosis reduces β-cleavage of APP and thus Aβ production (Ehehalt et al. 2003; Rajendran et al. 2006). It was suggested that APP and BACE1 are combined together after endocytosis by the clustering and coalescence of APP- and BACE1-containing rafts within endosomes (Hattori et al. 2006). A significant fraction of BACE1 is known to localize to lipid rafts and amyloidogenic processing of APP might occur within these rafts. As shown in Fig. 8(B,C), our immunofluorescence analysis showed that a large extent of fluorescence signal of APP appeared to coalesce with that of BACE1 in GSK3β- or CLASP2-knockdown cells. At this time, we could not clarify whether both APP and BACE1 are in the rafts of "same membrane vesicles". Hattori et al. (2006) reported that BACE1 and APP cluster and coalesce each other in the lipid raft at endosomes. As shown in Fig. S3A in Supporting Information, we observed that both BACE1 and APP were in the EEA1-positive membranous structures, suggesting the possibility that the membranous structures, which gathered at the juxtanuclear region, are lipid rafts at early endosomes. One possible experiment is to perform the co-fractionation experiment using sucrose density gradient. However, we believe that it would be very difficult to confirm the precise coalescence of APPs with BACE1 in the rafts of "same membrane vesicles". Even if BACE1 and APP were detected at the same fraction, we could not clarify whether these proteins exist at the same membrane vesicles or not. To solve this issue, we need to isolate the membranous structures in the juxtanuclear region and/or to confirm morphologically the co-localization of BACE1/APP in the lipid raft using immuno-electron microscopic analysis. From the morphological data using our light microscopic analysis, all we can say is that a large amount of APP appears to co-localize with BACE1 in the knockdown cells.
Recently, Fernández-Medarde et al. (2007) have shown a possible correlation between the decreased expression of CLASP2 and the pathogenesis of AD. They compared the levels of expression of individual genes in the hippocampus of Ras-GRF1 knockout mice, which have defects in memory consolidation, with those in the hippocampus of control mice by using microarray analysis. In this study, the Clasp2 gene was found to be heavily down-regulated and, taken together with the proposed functions of other genes that were found to be expressed differentially in these mice, CLASP2 protein is involved in neurodegenerative diseases such as AD. However, the authors supposed that the decreased expression of CLASP2 might contribute to microtubule destabilization and result in the formation of neurofibrillary tangles by phosphorylating tau during AD pathogenesis. There are few publications to date that demonstrate a positive relationship among defect in membrane trafficking, decreased activity of GSK3β, and excessive Aβ secretion. Our findings will shed light on the effect of the defect in membrane trafficking on AD pathogenesis.
We found that CDC42BPB, PRKACA, and CSNK2A1 did not enhance Aβ secretion even though they all perturbed the retrograde transport of CI-M6PR between the endosomes and the TGN. This suggests that a defect in the trafficking pathway is not sufficient for the increased secretion of Aβ. The trafficking pathways that are affected in CDC42BPB-, PRKACA-, or CSNK2A1-knockdown cells may be involved in the pathogenesis of diseases other than AD. Further studies are necessary to connect the kinases with their related diseases.
Our novel screening and analytical system has several notable features. Firstly, we will be able to identify the essential pathogenetic proteins that are upstream or downstream of the kinase because the protein kinase network has been studied extensively and many useful databases are available for general use. Secondly, the visual screening and assay system that we have described in this article is applicable to various types of localizomics studies. Several systematic screening methods that are based on gene silencing techniques such as RNAi have currently been established. In particular, recent advances in high-throughput imaging techniques and methods for image analysis have allowed morphological changes or dynamic processes such as mitosis and endo/exocytosis to be characterized in great detail by fluorescence microscopy (Pelkmans et al. 2005; Balklava et al. 2007). Our developed CellTech Station can do cell culture, transfection of siRNAs and plasmids, and indirect immunofluorescence analysis automatically, with the computational programs. It is highly possible that the functions associated with the CellTech Station are suitable for the various localizomics studies. By analyzing the localization of pathogenetically-important proteins, lipids, or mRNAs after the transfection of siRNAs against kinases, phosphatases, or other types of protein using our system, it will be possible to clarify the molecular links that are between the localization of these proteins and other macromolecules and the pathogenic mechanisms of related diseases.
| Experimental procedures |
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To acquire numerous imaging data in a systematic manner, we established an automated high-throughput fluorescence-based cell imaging system using cell array chips. The system consisted of microchamber array chips, automatic sample preparation equipment (the CellTech Station, which was custom-made for us by Nikkyo Technos Co., Ltd), and automatic fluorescence-image acquisition systems (Fig. 1B). Briefly, 48 microchambers (12 x 4) with a diameter of 2.5 mm and an inter-chamber distance of 3.0 mm were arrayed on a black-quartz chip (Fig. 1B). The bottom of each microchamber was made of transparent quartz (thickness, 0.15 mm), which allowed us to detect fluorescence images within the UV range using an oil immersion lens. The CellTech Station was used to do cell culture, transfection of siRNAs and plasmids, and indirect immunofluorescence analysis automatically, using different computational programs.
To acquire images of the cells in the microchambers, we used an INCell Analyzer 1000 system (GE Healthcare Co., Ltd) or LSM510 confocal microscopy system (Carl Zeiss Co., Ltd). The advantage of this system was the ability to obtain multi-colored images of the 48 microchambers at high speed using a x40 objective lens. By using the automatic sample preparation system, we could minimize the occurrence of discrepancies between the microchambers that were due to operational mistakes caused by human error.
Chemicals, antibodies and plasmids
The kinase inhibitors H-89, 3-methyladenine, and propranolol were purchased from Sigma Aldrich, and other kinase inhibitors from Calbiochem. These inhibitors were diluted to appropriate concentrations in DMSO and stored at –20 °C.
The antibodies that were used for western blotting were as follows: mouse polyclonal anti-CDC42BPB antibody (Abnova), mouse polyclonal anti-PRKACA antibody (Abnova), mouse polyclonal anti-PRKACG antibody (Abnova), rabbit polyclonal anti-CSNK2A1 antibody (BL753; Bethyl Laboratories), rabbit polyclonal anti-GSK3β antibody (Cell Signaling Technology), rabbit polyclonal anti-APP antibody (AB5352; Chemicon), mouse monoclonal anti-human amyloid β antibody (82E1; IBL), mouse monoclonal anti-GAPDH antibody (MAB374; Chemicon). HRP-conjugated anti-mouse and anti-rabbit antibodies from Upstate Biotechnology and Millpore, respectively, were used as secondary antibodies.
The antibodies that were used for immunofluorescence were as follows: rabbit polyclonal anti-CI-M6PR antibody (IBL), mouse monoclonal anti-p230 antibody (BD Biosciences), mouse monoclonal anti-EEA1 antibody (BD Biosciences), mouse monoclonal anti-Lamp2 antibody (H4B4; Developmental Studies Hybridoma Bank, University of Iowa, Iowa City, IA), rabbit polyclonal anti-myc antibody (Cell Signaling). The mouse monoclonal anti-LBPA antibody was a gift from Dr. Toshihide Kobayashi (RIKEN). The anti-CLASP2 polyclonal antibody was a gift from Dr. Irina Kaverina (Vanderbilt University Medical Center). Cy2- and Cy3-conjugated anti-mouse antibodies (Chemicon), a Cy3-conjugated anti-rabbit antibody (Chemicon), and an Alexa 488-conjugated anti-rabbit antibody (Invitrogen) were used as secondary antibodies.
The VSVGts045-GFP construct was a gift from Dr. Jennifer Lippincott-Schwartz (National Institutes of Health, Bethesda, MD).
Cell culture and transfection
HEK293 cells that stably expressed APPsw, and HeLa cells were cultured in Dulbecco's Modified Eagle's Medium (DMEM; Nissui) supplemented with 10% fetal bovine serum (GIBCO) and penicillin/streptomycin (GIBCO). Geneticin (1 mg/mL; Invitrogen) was also required for the HEK293 stable transfectant. For plasmid transfection into the kinase-knockdown cells, cells that had been incubated for 48 h after transfection with the siRNAs were transfected with 1 µg/mL plasmid using Lipofectamine PLUS (Invitrogen) according to the manufacturer's instructions.
RNAi manipulations
For siRNA screening, knockdown of the kinases by RNAi was carried out by the reverse transfection method using siPORT NeoFX Transfection Agent (Ambion) and 30 nM siRNA (Silencer® Human Kinase siRNA Library V3; Ambion) according to the manufacturer's instructions. Briefly, a mixture of Transfection Agent and siRNA was aliquotted into the eight-well glass-based dishes (Nunc). Subsequently, HeLa cells (approximately 10 000 per well) were added to the wells. After incubation at 37 °C with 5% CO2 for 72 h, the cells were immunostained with the antibodies as described in the text.
For the various assays that used kinase-knockdown cells, HeLa cells or HEK293 cells were plated on 35 mm dishes (Nunc) and transfected with 50 nM siRNA using Lipofectamine 2000 (Invitrogen) according to the manufacturer's instructions. The cells were analyzed after 72 h using an LSM510 laser scanning confocal microscope (Carl Zeiss Co., Ltd).
Quantification of Aβ
HEK-APP cells were plated on poly-L-lysine-coated six-well dishes (Sigma-Aldrich). After transfection of the siRNAs for 72 h, the cells were washed with PBS and then fresh medium was added. After a further incubation for 6 h, the medium and cells were collected. Quantification of Aβ in the medium was carried out by sandwich ELISA using a Human β Amyloid (1–40) ELISA Kit (Wako) and a Human β Amyloid (1–42) ELISA High Sensitive Kit (Wako), according to the manufacturer's instructions. The concentration of Aβ was normalized against the total protein concentration in the cell lysate as measured by the bicinchoninic acid (BCA) assay (Pierce).
Cholera Toxin Subunit B (CTxB) transport assay
After treatment with siRNA for 72 h, the cells were incubated with 1 µg/mL Alexa 556-conjugated CTxB (Alexa 556-CTxB) in PBS(+) (PBS with 0.9 mM CaCl2 and 0.5 mM MgCl2) on ice for 30 min and then washed with PBS(+) to remove the unbound toxin. After incubation at 37 °C for various periods of time, the cells were washed and fixed. We counted the number of cells in which Alexa 556-CTxB had accumulated in the juxtanuclear region (NJ: juxtanuclear region-labeled cells), and then calculated the percentage of cells in which transport from the PM to the juxtanuclear region had occurred (100 x NJ/total number of transfected cells).
| Acknowledgements |
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| Footnotes |
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* Correspondence: mmurata{at}bio.c.u-tokyo.ac.jp
| References |
|---|
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|---|
Arighi, C.N., Hartnell, L.M., Aguilar, R.C., Haft, C.R. & Bonifacino, J.S. (2004) Role of the mammalian retromer in sorting of the cation-independent mannose 6-phosphate receptor. J. Cell Biol. 165, 123–133.
Balklava, Z., Pant, S., Fares, H. & Grant, B.D. (2007) Genome-wide analysis identifies a general requirement for polarity proteins in endocytic traffic. Nat. Cell Biol. 9, 1066–1073.[CrossRef][Medline]
Cataldo, A.M., Barnett, J.L., Pieroni, C. & Nixon, R.A. (1997) Increased neuronal endocytosis and protease delivery to early endosomes in sporadic Alzheimer's disease: neuropathologic evidence for a mechanism of increased β-amyloidogenesis. J. Neurosci. 17, 6142–6151.
Cheng, T.S., Hsiao, Y.L., Lin, C.C., Yu, C.T., Hsu, C.M., Chang, M.S., Lee, C.I., Huang, C.Y., Howng, S.L. & Hong, Y.R. (2008) Glycogen synthase kinase 3β interacts with and phosphorylates the spindle-associated protein Astrin*. J. Biol. Chem. 283, 2454–2464.
Conde, S., Pérez, D.I., Martínez, A., Perez, C. & Moreno, F.J. (2003) Thienyl and phenyl
-halomethyl ketones: new inhibitors of glycogen synthase kinase (GSK-3β) from a library of compound searching. J. Med. Chem. 46, 4631–4633.[CrossRef][Medline]
Dangi, S. & Shapiro, P. (2005) Cdc2-mediated inhibition of epidermal growth factor activation of the extracellular signal-regulated kinase pathway during mitosis. J. Biol. Chem. 280, 24524–24531.
Derby, M.C., Lieu, Z.Z., Brown, D., Stow, J.L., Goud, B. & Gleeson, P.A. (2007) The trans-Golgi network golgin, GCC185, is required for endosome-to-Golgi transport and maintenance of Golgi structure. Traffic 8, 758–773.[CrossRef][Medline]
Efimov, A., Kharitonov, A., Efimova, N., Loncarek, J., Miller, P.M., Andreyeva, N., Gleeson, P., Galjart, N., Maia, A.R., McLeod, I.X., Yates, J.R., Maiato, H., Khodjakov, A., Akhmanova, A. & Kaverina, I. (2007) Asymmetric CLASP-dependent nucleation of noncentrosomal microtubules at the trans-Golgi network. Dev. Cell 12, 917–930.[CrossRef][Medline]
Ehehalt, R., Keller, P., Haass, C., Thiele, C. & Simons, K. (2003) Amyloidogenic processing of the Alzheimer β-amyloid precursor protein depends on lipid rafts. J. Cell Biol. 160 113–123.
Fernández-Medarde, A., Porteros, A., de, las, Rivas, J., Núñez, A., Fuster, J.J. & Santos, E. (2007) Laser microdissection and microarray analysis of the hippocampus of Ras-GRF1 knockout mice reveals gene expression changes affecting signal transduction pathways related to memory and learning. Neuroscience 146, 272–85.[CrossRef][Medline]
Fumoto, K., Hoogenraad, C.C. & Kikuchi, A. (2006) GSK-3b-regulated interaction of BICD with dynein is involved in microtubule anchorage at centrosome. EMBO J. 25, 5670–5682.[CrossRef][Medline]
Ghosh, P., Griffith, J., Geuze, H.J. & Kornfeld, S. (2003) Mammalian GGAs act together to sort mannose 6-phosphate receptors. J. Cell Biol. 163, 755–766.
Gomes, E.R., Jani, S. & Gundersen, G.G. (2005) Nuclear movement regulated by Cdc42, MRCK, Myosin, and Actin flow establishes MTOC polarization in migrating cells. Cell 121, 451–463.[CrossRef][Medline]
Hattori, C., Asai, M., Onishi, H., Sasagawa, N., Hashimoto, Y., Saido, T.C., Maruyama, K., Mizutani, S. & Ishiura, S. (2006) BACE1 interacts with lipid raft proteins. J. Neurosci. Res. 84, 912–917.[CrossRef][Medline]
He, X., Li, F., Chang, W.P. & Tang, J. (2005) GGA proteins mediate the recycling pathway of Memapsin 2 (BACE). J. Biol. Chem. 280, 11696–11703.
Hirosako, K., Imasato, H., Hirota, Y., Kuronita, T., Masuyama, N., Nishioka, M., Umeda, A., Fujita, H., Himeno, M. & Tanaka, Y. (2004) 3-Methyladenine specifically inhibits retrograde transport of cation-independent mannose 6-phospate/insulin-like growth factor II receptor from the early endosome to the TGN. Biochem. Biophys. Res. Commun. 316, 845–582.[CrossRef][Medline]
Kar, S., Poirier, J., Guevara, J., Dea, D., Hawkes, C., Robitaille, Y. & Quirion, R. (2006) Cellular distribution of insulin-like growth factor-II/mannose-6-phosphate receptor in normal human brain and its alteration in Alzheimer's disease pathology. Neurobiol. Aging 27, 199–210.[CrossRef][Medline]
Kierbel, A., Gassama-Diagne, A., Mostov, K. & Engel, J.N. (2005) The phosphoinositol-3-kinase–protein kinase B/Akt pathway is critical for Pseudomonas aeruginosa strain PAK internalization. Mol. Biol. Cell 16, 2577–2585.
Lee, Y.S., Paek, K.S., Kang, E.S., Jang, H.S., Kim, H.J., Kang, Y.J., Kim, J.H., Lee, H.T., Lee, J.H., Chang, K.C., Nishinaka, T. & Seo, H.G. (2005) Involvement of nuclear factor kB in up-regulation of aldose reductase gene expression by 12-O-tetradecanoylphorbol-13-acetate in HeLa cells. Int. J. Biochem. Cell Biol. 37, 2297–2309.[CrossRef][Medline]
Mathews, P.M., Guerra, C.B., Jiang, Y., Grbovic, O.M., Kao, B.H., Schmidt, S.D., Dinakar, R., Mercken, M., Hille-Rehfeld, A., Rohrer, J., Mehta, P., Cataldo, A.M. & Nixon, R.A. (2002) Alzheimer's disease-related overexpression of the cation-dependent mannose 6-phosphate receptor increases Aβ secretion. J. Biol. Chem. 277, 5299–5307.
Mimori-Kiyosue, Y., Grigoriev, I,, Lansbergen, G., Sasaki, H., Matsui, C., Severin, F., Galjart, N., Grosveld, F., Vorobjev, I., Tsukita, S. & Akhmanova, A. (2005) CLASP1 and CLASP2 bind to EB1 and regulate microtubule plus-end dynamics at the cell cortex. J. Cell Biol. 168, 141–153.
Noble, W., Planel, E., Zehr, C., Olm, V., et al. (2005) Inhibition of glycogen synthase kinase-3 by lithium correlates with reduced tauopathy and degeneration in vivo. Proc. Natl Acad. Sci. USA 102, 6990–6995.
Pelkmans, L., Fava, E., Grabner, H., Hannus, M., Habermann, B., Krausz, E. & Zerial, M. (2005) Genome-wide analysis of human kinases in clathrin- and caveolae/raft-mediated endocytosis. Nature 436, 78–86.[CrossRef][Medline]
Phiel, C.J., Wilson, C.A., Lee, V.M. & Klein, P.S. (2003) GSK-3b regulates production of Alzheimer's disease amyloid-β peptides. Nature 423, 435–439.[CrossRef][Medline]
Rajendran, L., Honsho, M., Zahn, T.R., Keller, P., Geiger, K.D., Verkade, P. & Simons, K. (2006) Alzheimer's disease β-amyloid peptides and released in association with exosomes. Proc. Natl Acad. Sci. USA 103, 11172–11177.
Reddy, J.V., Burguete, A.S., Sridevi, K., Ganley, I.G., Nottingham, R.M. & Pfeffer, S.R. (2006) A functional role for the GCC185 golgin in mannose 6-phosphate receptor recycling. Mol. Cell. Biol. 10, 4353–4363.
Rockenstein, E., Torrance, M., Adame, A., Mante, M., Bar-on, P., Rose, J.B., Crews, L. & Masliah, E. (2007) Neuroprotective effects of regulators of the glycogen synthase kinase-3β signaling pathway in a transgenic model of Alzheimer's disease are associated with reduced amyloid precursor protein phosphorylation. J. Neurosci. 27, 1981–1991.
Saido, T.C. & Iwata, N. (2006) Metabolism of amyloid beta peptide and pathogenesis of Alzheimer's disease. Towards presymptomatic diagnosis, prevention and therapy. Neurosci. Res. 54, 235–253.[CrossRef][Medline]
Saucerman, J.J., Zhang, J., Martin, J.C., Peng, L.X., Stenbit, A.E., Tsien, R.Y. & McCulloch, A.D. (2006) Systems analysis of PKA-mediated phosphorylation gradients in live cardiac myocytes. Proc. Natl Acad. Sci. USA 103, 12923–12928.
Schermer, B., Höpker, K., Omran, H., et al. (2005) Phosphorylation by casein kinase 2 induces PACS-1 binding of nephrocystin and targeting to cilia. EMBO J. 24, 4415–4424.[CrossRef][Medline]
Scott, G.K., Fei, H., Thomas, L., Medigeshi, G.R. & Thomas, G. (2006) A PACS-1, GGA3 and CK2 complex regulates CI-MPR trafficking. EMBO J. 25, 4423–4435.[CrossRef][Medline]
Shiba, T., Kametaka, S., Kawasaki, M., Shibata, M., Waguri, S., Uchiyama, Y. & Wakatsuki, S. (2004) Insights into the phosphoregulation of β-secretase sorting signal by the VHS domain of GGA1. Traffic 5, 437–448.[CrossRef][Medline]
Small, S.A., Kent, K., Pierce, A., Leung, C., Kang, M.S., Okada, H., Honig, L., Vonsattel, J.P. & Kim, T.W. (2005) Model-guided microarray implicates the retromer complex in Alzheimer's disease. Ann. Neurol. 58, 909–919.[CrossRef][Medline]
Su, Y., Ryder, J. & Ni, B. (2003) Inhibition of Aβ production and APP maturation by a specific PKA inhibitor. FEBS lett. 546, 407–410.[CrossRef][Medline]
Tesco, G., Koh, Y.H., Kang, E.L., Cameron, A.N., Das, S., Sena-Esteves, M., Hiltunen, M., Yang, S.H., Zhong, Z., Shen, Y., Simpkins, J.W. & Tanzi, R.E. (2007) Depletion of GGA3 stabilizes BACE and enhances β-secretase activity. Neuron 54, 721–737.[CrossRef][Medline]
Tomiyama, Y., Waguri, S., Kanamori, S., Kametaka, S., Wakasugi, M., Shibata, M., Ebisu, S. & Uchiyama, Y. (2004) Early-phase redistribution of the cation-independent mannose 6-phosphate receptor by U18666A treatment in Hela cells. Cell Tissue Res. 317, 253–264.[Medline]
Waguri, S., Tomiyama, Y., Ikeda, H., Hida, T., Sakai, N., Taniike, M., Ebisu, S. & Uchiyama, Y. (2006) The luminal domain participates in the endosomal trafficking of the cation-independent mannose 6-phosphate receptor. Exp. Cell Res. 312, 4090–4107.[CrossRef][Medline]
Wang, J.Z., Grundke-Iqbal, I. & Iqbal, K. (2007) Kinases and phosphatases and tau sites involved in Alzheimer neurofibrillary degeneration. Eur. J. Neurosci. 25, 59–68.[Medline]
Weidemann, A., König, G., Bunke, D., Fischer, P., Salbaum, J.M., Masters, C.L. & Beyreuther, K. (1989) Identification, biogenesis, and localization of precursors of Alzheimer's disease A4 amyloid protein. Cell 57, 115–126.[CrossRef][Medline]
Wilkinson, S., Paterson, H.F. & Marshall, C.J. (2005) Cdc42-MRCK and Rho-ROCK signalling cooperate in myosin phosphorylation and cell invasion. Nat. Cell Biol. 7, 255–261.[CrossRef][Medline]
Wittmann, T. & Waterman-Storer, C.M. (2005) Spatial regulation of CLASP affinity for microtubules by Rac1 and GSKb in migrating epithelial cells. J. Cell Biol. 169, 929–939.
Wong, W. & Scott, J.D. (2004) AKAP signaling complexes: Focal points in space and time. Nat. Rev. Mol. Cell Biol. 5, 959–970.[CrossRef][Medline]
Received: 10 November 2008
Accepted: 30 November 2008
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