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1 Roche Centre for Medical Genomics, F. Hoffmann-La Roche, Ltd, Postfach, 4070 Basel, Switzerland
2 Centre of Physiology and Pathophysiology, Institute of Neurophysiology, University of Cologne, Germany
| Abstract |
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| Introduction |
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B, cyclin dependent kinases (cdk), and inhibition of enzyme activities participating in malignant proliferative diseases (Chung et al. 1999; Dong et al. 1997; Dong 2000). In general, the ability of tumour cells to grow in an anchorage-independent fashion, forming spheroids, is considered to be a classic predictor of in vivo tumorigenicity (Freedman & Shim 1974; Santini & Rainaldi 1999), and this process suggests an alteration in cellular processes like proliferation and adhesion. We have previously demonstrated that EGCG, the main compound of green tea catechins, inhibits spheroid formation of human A172 glioblastoma cells and of sis-transfected NIH 3T3 colony cells (Ahn et al. 1999; Sachinidis et al. 2000). To determine whether the chemopreventive activity of EGCG might be attributed to inhibition of spheroid formation we extended our studies to examine the effect of EGCG on spheroid formation of HT 29 colon carcinoma cells. DNA microarray technology allows for multiparallel analysis of thousands of transcripts, and was applied to identify target genes that may mediate the anti-tumorigenic effects of catechins. Thus, gene expression profiles of human HT 29 colon carcinoma cells grown in monolayer, in HT 29 spheroids and in EGCG-treated cells were analysed. | Results |
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Treatment of HT 29 cells with EGCG (2.5-50 µM) resulted in a dose-dependent inhibition of spheroid formation of HT 29 cells (Fig. 1). Spheroid formation was almost completely inhibited by 20 µM EGCG (Fig. 1B). The diameter of single HT 29 cells was calculated to be 20 ± 2 µm while that of spheroids was 80 ± 4 µm (Mean ± SEM, n = 15). As shown in Fig. 1C, anchorage independent spheroid formation of HT 29 cells in bacterial petri dishes was also significantly reduced. However, spheroid formation under these conditions occurs at a much faster rate and spheroids are considerably larger (diameter: 163 ± 12 µm (Mean ± SEM, n = 21) compared to those formed in soft agar. Additionally, inhibition of spheroid formation under these conditions requires higher concentrations of EGCG: treatment of the cells with 100 µM EGCG resulted in a significant decrease of the diameter of spheroids, being reduced from 163 ± 12 µm to 44 ± 5 µm (Mean ± SEM, n = 21).
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For microarray analysis, total RNA was isolated from triplicate cultures of adherent HT 29 cells (single cells), from HT 29 spheroids generated after 3 days in bacterial Petri dishes (3-day-old spheroids) and from HT 29 cells after 3 days in the presence of 100 µM EGCG (3-day old EGCG-spheroids) (Fig. 1C). For data analysis we selected those transcripts which gave significant change factors across the three replicates as assessed by a non-paired t-test with a P-value < 0.05. Figure 2 shows 40 transcripts, clustered according to their annotated function, which were at least twofold induced (change factor = 1, P < 0.05) in 3-day-old spheroids as compared to single cells, wherein known oncogenes like c-fos and c-jun are significantly up-regulated (see Supplementary material for raw data, Table S1). Some genes (including c-fos) are represented by several probe sets on the array and where these genes were regulated a consistent response is observed for all probe pairs (Fig. 2). A comparison of the transcriptional responses in 3-day-old spheroids and spheroids formed in the presence of EGCG selects a second set of downmodulated genes (Fig. 3), with distinct functions such as proliferation, signal transduction and cell adhesion, all of which processes are modified during the course of tumour development (see Supplementary material for raw data, Table S2).
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Effect of EGCG on IQGAP2 and c-Fos protein levels in EGCG-treated HT 29 cells
To determine if downmodulation of gene expression by EGCG is also reflected at the translational level, Western blotting analysis of selected genes was performed. Thus a gene associated with cellular proliferation (c-fos) was chosen for further analysis as was a gene involved in signal transduction (IQGAP2). As demonstrated in Fig. 4, in agreement with the DNA chip data, c-Fos protein level was increased in HT 29 spheroids and this level was not altered by treatment with EGCG under the conditions tested. Similarly in agreement with the DNA chip data, IQGAP2 protein was not increased in spheroids while treatment with 50 µM EGCG reduced the level of protein observed; increasing the dose of EGCG to 100 µM completely inhibited protein production. Although only two genes have been tested, the results obtained from the microarray analysis might correspond closely to the observed level of protein after EGCG treatment.
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| Discussion |
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Regarding the pathology of human cancer, six characteristic properties can be attributed to the cancer cell: self-sufficiency in growth signals, insensitivity to growth-inhibitory signals, ability to evade apoptosis, limitless replicative potential, ability to sustain angiogenesis, and ability to invade tissues and metastasize (Hanahan & Weinberg 2000). The sequence in which these capabilities are acquired vary within and between tumours. Thus in this study where we have exploited HT 29 cells as a model for an early developmental stage of colon cancer, spheroid formation is accompanied by growth promotion given that there is an increase in cell number; additionally spheroids are not subject to the same restrictions as normal somatic cells in terms of cell adhesion and contact inhibition. It is well known that catechins inactivate several proteins that are associated with proliferative diseases probably via physicochemical interactions (Ahn et al. 1999; Chen et al. 1998; Kitano et al. 1997; Nam et al. 2001; Okabe et al. 1999; Sachinidis et al. 2000, 2002; Sazuka et al. 1996, 1998; Wang et al. 1988). More recently, we showed that plasma membrane incorporated EGCG or soluble EGCG directly interacts with growth factors such as PDGF, thereby preventing specific receptor binding (Weber et al. 2003). However, less is known about the transcriptional changes resulting as a consequence of such interactions.
Based on our gene expression analysis, a comparison between normal single cells and cells that underwent spheroid formation, there are a clear number of candidates suggestive of a tumorigenic pathway in effect (Fig. 2). Among the 40 induced transcripts, several belong to classes of genes that are typically associated with the process of tumorigenesis, such as proliferation and differentiation, signal transduction, cellular adhesion and metabolic processes (Fig. 2). Both c-fos and c-jun are known to function in proliferation and differentiation processes and their involvement in the epidemiology of human cancers is well-documented (Jochum et al. 2001; Shaulian & Karin 2001), and in this work both molecules were found to be up-regulated in HT 29 spheroids (Figs 2 and 4) while being refractory to EGCG treatment at both the mRNA and protein levels (Figs 3 and 4). Several transcription factors have also demonstrated significant changes over the two conditions in support of the theory of subverted cellular function in tumorigenesis. A number of hypothetical proteins and ESTs were also induced in spheroids and these are involved in oncogenesis, as in the case of the gene product for kiaa0429 (AB007889 [GenBank] ), which corresponds to a gene called metastasis suppressor 1, which is involved in regulating the actin cytoskeleton (Mattila et al. 2003).
Examining the difference between spheroids treated with EGCG and those which were not treated reveals another set of genes, expression of which is repressed by EGCG (Fig. 3), with similar ontology classifications as for the set of genes induced in spheroids, including proliferation and differentiation, signalling, cell adhesion, and metabolism. For example expression of the signalling molecule IQGAP2 is affected by catechin treatment (Fig. 3) as is the production of protein from the gene (Fig. 4). IQGAP1 and IQGAP2 are RasGTPase-activating-protein (RasGAP)-related proteins that interact with calmodulin, F-Actin and with the small RhoGTPases, Cdc42 and Rac1 and Rho, thereby regulating cadherin-mediated cell-cell adhesion (Brill et al. 1996; Li et al. 2000; Zhang et al. 1997).
In terms of the global effect of EGCG on gene expression, there are two different modes visible. Certain transcripts that are induced in spheroids as compared to single HT 29 cells, are relatively unaffected by EGCG treatment, at the concentration of 100 µM used here. Conversely, EGCG exposure has an appreciable effect on other genes that are induced in spheroids, resulting in down-regulation of their expression to levels close to that found in single HT 29 cells. Genes that are most responsive to EGCG include molecules that are involved in adhesion, like galectin-2 and annexin A13, which is in support of the theory that EGCG functions to reduce the loss of contact inhibition that allows spheroids to form. The observed effect of EGCG on spheroid formation in soft agar where spheroids are significantly smaller than those formed from untreated cells also indicates such an effect (Fig. 1C). Galectins modulate cell-cell and cell-matrix interactions and have a demonstrated role in colon cancer metastasis (Hittelet et al. 2003; Rabinovich et al. 2002). These findings suggest a mechanism whereby physicochemical interactions of catechins with certain cellular proteins results in a suppression of the expression of genes that are involved in the development of proliferative diseases. This concept is supported by several experimental studies (Weber et al. 2003).
Recently in a study of the effect of EGCG on a defined set of 250 genes associated with kinases and phosphatases that are involved in signalling in cell cycle regulation, apoptosis and metabolic pathways, a total of 25 genes were found to be modulated in an adherent prostate carcinoma cell line (16 induced and 9 repressed); these 25 genes were associated with different pathways implying multiple combinatorial downstream effects of EGCG (Wang & Mukhtar 2002).
In general, inhibition of genes by EGCG on a transcriptional level might reflect inhibition at the protein level as demonstrated for IQGAP2 and c-Fos (Fig. 4). However, although only two genes have been tested, we may speculate that the results obtained from the microarray analysis might correspond closely to the level of proteins. Work performed to date would imply that there is not a clear mutually dependent relationship between transcript and protein levels, due to post-translational modifications, post-transcriptional control of gene expression as well as changes in expression levels, protein synthesis and degradation rates (Anderson & Seilhamer 1997; Gygi et al. 1999; Lee 2001).
Overall, we have shown that exposure of HT 29 cells to EGCG has a direct effect on the size and quantity of spheroids produced in suspension culture (Fig. 1C), and that such an outcome may be directly related to the altered transcriptional response observed. Rather than focusing on one specific pathway within the cell it would appear that the effect of EGCG is rather more heterogeneous in nature, producing pleiotropic effects in diverse pathways such as proliferation, differentiation, adhesion and metabolism. Remarkably, no expression of cytotoxic or apoptotic related genes has been observed in EGCG-treated cells suggesting a non-toxic and non-apoptotic inhibitory intracellular mechanism.
We have presented a novel experimental strategy exploiting an in vitro model of tumorigenesis representative of in vivo tumours that not only provides insight into the molecular mechanisms of different chemopreventive agents but also allows discovery of new target genes for development of drugs for cancer therapy and prophylaxis.
| Experimental procedures |
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Modified Eagles medium (MEM), and McCoy's 5 A medium with L-glutamine were obtained from Gibco BRL, Eggenstein, Germany. (-)-EGCG was obtained from Sigma Chemical Company, Deisenhofen, Germany. Monoclonal mouse antibodies to IQGAP2 and rabbit polyclonal antibodies to c-FOS (sc-52) were obtained from Santa Cruz Biotechnology (Heidelberg, Germany). Human Genome GeneChip® U95Av2 arrays were obtained from Affymetrix (Santa Clara, California, USA). Plastic tissue culture dishes were obtained from Falcon (BD Biosciences, Heidelberg, Germany) and bacteriological culture dishes were obtained from Greiner (Kremsmünster, Austria).
Cell culture
Human HT-29 colon carcinoma cells were provided by the DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH) cell bank (established from the primary tumour of a 44-year old Caucasian woman with colon carcinoma in 1964). Cells were cultured in McCoy's 5A medium supplemented with 10% foetal calf serum (FCS).
Soft agar assay
The soft agar assay was performed as previously described (Sachinidis et al. 2000). Briefly, 35-mm tissue culture dishes were underlaid with 1 mL MEM supplemented with 0.7% agar, 10% FCS and varying concentrations of EGCG. After trypsinization, 5 x 104 single HT 29 cells were suspended in 1.5 mL MEM supplemented with 0.35% agar, 10% FCS and either 20 or 50 µM EGCG and plated on the 0.7% agar underlay. Cells were fed once per week with 2 mL MEM supplemented with 10% FCS (10%FCS/MEM) and either 50 or 100 µM of EGCG. Cells were imaged by phase-contrast light microscopy after 1 h and 10 days. Data are expressed as the arithmetic mean ± SEM. Statistical analysis was performed using the Mann-Whitney U-test and by a non-paired t-test. P < 0.05 was considered statistically significant.
Bacteriological petri dish assay
After trypsinization single cells were cultured for different periods of time in 10% FCS/MEM on petri dishes (Greiner, 664102, 10 cm). After 1 h and 3 days cells were photographed by phase-contrast light microscopy. Data are expressed as the arithmetic mean ± SEM. Statistical analysis was performed using the Mann-Whitney U-test and by a non-paired t-test. P < 0.05 was considered statistically significant. This assay has been used in order to isolate total RNA from the spheroids using RNA-Bee from ams biotechnology, Europe.
Target preparation and microarray hybridization
Triplicate samples of 10 µg total RNA, prepared from single HT 29 cells, from spheroids that were formed after three days (3-day-old spheroids) and from small spheroids that were formed after 3 days in the presence of 100 µM EGCG (EGCG spheroids) were used to generate biotinylated cRNA following the Affymetrix standard protocol. 15 µg cRNA was hybridized for 16 h at 45 °C to Human Genome U95Av2 GeneChip® oligonucleotide arrays, which carry probes representing
12 000 sequences previously characterized in terms of disease association or function, from the Human Unigene database (Build 95). Following hybridization arrays were washed and stained with streptavidin-phycoerythrin and thereafter scanned using an Affymetrix scanner according to the manufacturer's protocols.
Data analysis
Raw data was collected using Microarray Suite software, version 5.0 from Affymetrix®. Differential expression analysis was carried out using RACE-A (Roche Affymetrix Chip ExperimentAnalysis) as previously described (Certa et al. 2003). Expression data were calculated using mean-based normalization, non-paired t-test calculation and Nalimov test for outlier removal at 95% confidence interval. Changes in mRNA expression levels are referred to as change factors which is defined as (cond2/cond1) 1 in the case of an increase, (cond1/cond2) +1 for a decrease and 0 if no change is exemplified. A change factor of at least ±1 and a positive non-paired t-test at the 95% confidence interval were used to identify and restrict the number of differentially expressed genes. Hierarchical clustering was performed using a Euclidean distance algorithm with centred weighting.
Electrophoresis, and Western blot analysis
Cells or spheroids were lysed with 1 mL RIPA buffer (50 mM NaCl, 20 mM Tris-HCl, 50 mM NaF, 10 mM EDTA, 20 mM Na4P2O7 10H2O, 1% Triton X-100, pH 7.4) containing 1 mM Na3VO4, 1 mM phenylmethylsulphonyl fluoride (PMSF), 10 µg/mL leupeptin, 10 µg/mL anti-pain, and 0.023 TIU/mL aprotinin. Proteins were separated on a 7.5% SDS polyacrylamide gel (SDS-PAGE) and transferred to nitrocellulose membranes for Western blotting. Enhanced chemiluminescence Western blotting analysis using primary monoclonal anti-IQGAP2 (1 : 200) and anti-Fos (1 : 200) was carried out as previously described (Sachinidis et al. 2002). Equal amounts of protein (15 µg per lane) were analysed after stripping and reblotting of the membranes with monoclonal anti-ß-tubulin (1 : 500) and a secondary horseradish peroxidase-labelled anti-mouse IgG (1 : 5000).
| Supplementary material |
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Table S1 Mean values (n= 3) of the normalized raw data after filtering for significant changes are shown for the comparison of Control HT 29 cells vs. HT 29 spheroids. Affymetrix IDs for probes sets are shown as are descriptions of each transcript. Change factors for the conditions are shown together with the calculated P-value. For more details see legend to Fig. 2. Table S2 Mean values (n= 3) of the normalized raw data after filtering for significant changes are shown for the comparison of HT 29 spheroids virus HT 29 spheroids grown in the presence of EGCG. Affymetrix IDs for probes sets are shown as are descriptions of each transcript. Change factors for the conditions are shown together with the calculated P-value.
| Acknowledgements |
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| Footnotes |
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* Correspondence: E-mail: a.sachinidis{at}uni-koeln.de
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Received: 27 February 2004
Accepted: 30 April 2004
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